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Date
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Topic
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Reading
Assignments
o
to be completed before class on specified date
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Written Assignments
o
to be completed before class on specified date.
o
be prepared to submit
your assignment for review at the beginning of class upon request of the
instructor.
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Jan
19
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Course Overview
Introduction to Nanoscience
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Syllabus handout
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·
Complete online SURVEYS posted at link sent in
email to class
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Bio 350 students: SCHEDULE MEETING with Ms.
Mellissa Burk, Course GA, before February 2 to discuss
internship application statements
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Jan
26
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The Origins and Basic Physics of Nanoscience
GUEST SPEAKER: Dr. Boris Kiefer, Physics Department,
NMSU
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o
NNI Big
Things from a Tiny World
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Feynman’s “Plenty of Room at the
Bottom”
o
Ch 4, The
Brownian Universe, Physics at the Nanoscale (Soft Machines)
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Web-based INQUIRY EXERCISE in preparation for the
lecture:
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What is the predicted population increase over
the next 25 years?
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What is the predicted increase in energy demand
related to the population increase?
o
Name and document (briefly) four societal challenges
for science and technology in the 21st century.
o
Name and document (briefly) two applications of
energy concepts in life science and engineering
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Who was Richard Feynman and what is his
contribution to nanoscience?
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Provide 3 examples of a nanoscale objects
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Feb 2
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Nanoscience Internship
Applications
Nanobioscience basics
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o
NT pp. 11-35 (Ch 2,Size Matters; Ch 3,
Fundamental science of Nanotechnology)
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NT pp 83-106 (Ch 6, Smart Materials; Ch 7,
Sensors)
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NT pp 107-120 (Ch 8, Biomedical Applications;
Ch 9, Optics)
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SM pp 15-38, 146-153 (Ch 2, Looking at the
Nanoworld; Ch 6, Motors)
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CAREER DEVELOPMENT
visit these
websites for student internships and bring information about 3
INTERNSHIPS that interest you to class.
GAME SHOW/Bio 350
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Inquisitors: Prepare questions
using the text assigned to your team. Each team member should prepare 15
questions. Prepare a mixture of T/F, multiple choice, open ended questions
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Competitors, Read same material.
Be prepared for team competition!
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Team Text Assignments
Bio 350 Team 1 NT pp. 11-35 (Ch 2,Size Matters; Ch 3,
Fundamental science of Nanotechnology)
Bio 350 Team 2 NT pp 83-106 (Ch 6, Smart Materials; Ch
7, Sensors)
Bio 350 Team 3 NT pp 107-120 (Ch 8, Biomedical
Applications; Ch 9, Optics)
Bio 550 Team 4 SM pp 15-38, 146-153 (Ch 2, Looking at
the Nanoworld; Ch 6, Motors)
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Feb 9
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Fluorescence
Nanocrystal Quantum Dots
Nanoengineering
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Websites and articles:
Be sure to login from NMSU internet to read the
articles
o
http://www.invitrogen.com/site/us/en/home/References/Molecular-Probes-The-Handbook/Introduction-to-Fluorescence-Techniques.html
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http://micro.magnet.fsu.edu/primer/techniques/fluorescence/fluorointrohome.html
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http://www.evidenttech.com/quantum-dots-explained.html
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http://probes.invitrogen.com/media/publications/600.pdf
o
http://physicsworld.com/cws/article/print/17016
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Quantum
Dots for Live Cells, in Vivo Imaging, and Diagnostics (Michalet et al) [online (NMSUBB)]
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Bio 350 Submit draft personal and research statements suitable
for internship applications (50 points)
1) Principles of Fluorescence.
- Access
the following link and be prepared to explain the following
figures: Fig 1, 2, 4, 1.96,
1.54, 10.56, 2.28
o
http://www.invitrogen.com/site/us/en/home/References/Molecular-Probes-The-Handbook/Introduction-to-Fluorescence-Techniques.html
- Access
the following link and complete the tutorials for Jablonski diagram,
solvent effects and photobleaching
http://micro.magnet.fsu.edu/primer/techniques/fluorescence/fluorointrohome.html
2) Quantum dots come to class ready to answer the
following:
- What
are QDs made of?
- How
do QDs work?
- What
are their optical properties?
- What
are applications for QDs in biology?
- What
are the concerns about QDS and biological systems (cells, organisms)
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Feb
16
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Bioenergetics &
Photosynthesis
Molecular Motors
Academic Honesty (Burk)
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Read
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Soft NanoMachine Text
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Ch 6 Machines and Mechanisms (pp 146-153)
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Ch 8 Single Molecule Electronics (pp 186-195)
o
View the Photosynthesis Animation
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http://www.cnr.vt.edu/dendro/forestbiology/photosynthesis.swf
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Quantum
Dots for Live Cells, in Vivo Imaging, and Diagnostics (Michalet et al) [online (NMSUBB)]
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1) Be prepared to discuss the QD literature from Feb 9
and to
answer to these questions:
o
Provide examples of linear and rotary motors in
nature
o
How are conventional solar cells and photosynthesis
similar and different?
o
Who is Michael Graetzel and what did he invent?
2) Bring pictures of the hypothetical
three-dimensional structures of two biomolecular motors of your
choice as determined by Xray and
other diffraction methods. This website
may be useful: http://www.ncbi.nlm.nih.gov/Structure/index.shtml
3) Bring a picture of your favorite Nanobot to class
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Feb 23
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Nanomaterials and BioToxicity
GUEST SPEAKER: Dr. Kevin Houston, Chemistry &
Biochemistry, NMSU
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Read the article by Dr. Houston posted on Blackboard
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Bio 350 Submit revised
personal and research statements suitable for internship
applications (50 points)
Bring 3 questions to ask Dr.
Huston based on your reading of his article. You will hand submit these questions to
the GA at the beginning of class.
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Mar 2
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Measuring
the Invisible
Ethical and Societal Dimensions of Nanoscience
Research
Reading the Primary Literature
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Read
o
How
to Read a Scientific Paper
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Nanotechnology and the
Developing World (Salamanca-Buentello
et al) [online (NMSUBB)]
o
Single molecule nanobioscience (Akihiko Ishijima and Toshio
Yanagida) [online (NMSUBB)]
o
Quantum dots are powerful
multipurpose vital labeling agents in Zebrafish embryos (Rieger et al) [online
(NMSUBB)]
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View movies online under
supplemental materials
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Submit Journal Part 1 in class (300 points)
Print
this picture and bring to class:
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http://nobelprize.org/educational_games/physics/microscopes/powerline/index.html
For each paper:
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Be prepared to discuss the papers and explain the figures.
o
Bring a list to class of up
to 10 key concepts presented in the paper
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If the papers raise ethical issues or concerns please summarize
them briefly for class discussion
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Mar 9
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Reading the Primary Literature
Design Challenge
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Last day to drop with W
Read
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Nanotechnology and the
Developing World: Will Nanotechnology Overcome Poverty or Widen
Disparities?
(Invernizzi and Foladori) [online (NMSUBB)]
o
Applications
of Nanobiotechnology in Clinical Diagnostics
(Jain) [online
(NMSUBB)]
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Nanoparticles:
pharmacological and toxicological significance
(Medina et al) [online
(NMSUBB)]
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Be prepared to discuss the papers and explain the
figures.
For each paper:
o
Be prepared to discuss the papers and explain the figures.
o
Bring a list to class of up
to 10 key concepts presented in the paper
o
If the papers raise ethical issues or concerns please summarize
them briefly for class discussion
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Mar
16
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Lab Demos
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View the tutorials before the class:
Scanning Electron Microscopy
(SEM) http://micro.magnet.fsu.edu/primer/java/electronmicroscopy/magnify1/index.html
Transmission Electron Microscopy (TEM)
http://nobelprize.org/educational_games/physics/microscopes/tem/index.html
http://nobelprize.org/educational_games/physics/microscopes/tem/preparation.html
http://nobelprize.org/educational_games/physics/microscopes/tem/gallery/index.html
Atomic Force Microscopy (AFM)
http://www.jpk.com/what-is-atomic-force-microscopy.432.html
GRADS READ:
Crystallisation, structure and function of plant
light-harvesting Complex II (Barros, Kühlbrandt) [online (NMSUBB)]
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Bio 550 Submit draft 2 page research proposal (50 points)
Bring a sample to scan of woody plant or mineral origin.
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Mar
23
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Spring Break
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Vacation!
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n/a
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Apr
20
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Student Dissemination Presentations
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Not applicable
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Bio 550 Submit revised 2 page research proposal (50 points)
Submit Journal Part 2 in class (300 points)
Present dissemination project (150 points)
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May 6
Finals
Week
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Date/time in
official schedule for courses that meet Tuesday at 3:30
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Final Exam (150 points)
Thursday May 6
3:30-5:30 pm
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Final Exam (150 points)
Thursday May 6
3:30-5:30 pm
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