NANOBIOSCIENCE 2010
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Date

Topic

Reading Assignments

 

o         to be completed before class on specified date

Written  Assignments

 

o         to be completed before class on specified date.

o         be prepared to  submit your assignment for review at the beginning of class upon request of the instructor.

Jan 19

Course Overview

Introduction to Nanoscience

Syllabus handout

·          Complete online SURVEYS posted at link sent in email to class

·          Bio 350 students: SCHEDULE MEETING with Ms. Mellissa Burk, Course GA, before February 2 to discuss internship application statements

Jan 26

The Origins and Basic Physics of Nanoscience

GUEST SPEAKER: Dr. Boris Kiefer, Physics Department, NMSU

 

o         NNI Big Things from a Tiny World

o         Feynman’s “Plenty of Room at the Bottom

o         Ch 4, The Brownian Universe, Physics at the Nanoscale (Soft Machines)

Web-based INQUIRY EXERCISE in preparation for the lecture:

o         What is the predicted population increase over the next 25 years?

o         What is the predicted increase in energy demand related to the population increase?

o         Name and document (briefly) four societal challenges for science and technology in the 21st century.

o         Name and document (briefly) two applications of energy concepts in life science and engineering

o         Who was Richard Feynman and what is his contribution to nanoscience?

o         Provide 3 examples of a nanoscale objects

 

Feb 2

Nanoscience Internship Applications

 

Nanobioscience basics

 

 

o         NT pp. 11-35 (Ch 2,Size Matters; Ch 3, Fundamental science of Nanotechnology)

o         NT pp 83-106 (Ch 6, Smart Materials; Ch 7, Sensors)

o         NT pp 107-120 (Ch 8, Biomedical Applications; Ch 9, Optics)

o         SM pp 15-38, 146-153 (Ch 2, Looking at the Nanoworld; Ch 6, Motors)

 

CAREER DEVELOPMENT

visit these websites for student internships and bring information about 3 INTERNSHIPS that interest you to class. 

 

GAME SHOW/Bio 350

o         Inquisitors: Prepare questions using the text assigned to your team. Each team member should prepare 15 questions. Prepare a mixture of T/F, multiple choice, open ended questions

o         Competitors, Read same material. Be prepared for team competition!

o         Team Text Assignments

Bio 350 Team 1  NT pp. 11-35 (Ch 2,Size Matters; Ch 3, Fundamental science of Nanotechnology)

Bio 350 Team 2  NT pp 83-106 (Ch 6, Smart Materials; Ch 7, Sensors)

Bio 350 Team 3  NT pp 107-120 (Ch 8, Biomedical Applications; Ch 9, Optics)

Bio 550 Team 4  SM pp 15-38, 146-153 (Ch 2, Looking at the Nanoworld; Ch 6, Motors)

Feb 9

Fluorescence

 

Nanocrystal Quantum Dots

 

Nanoengineering

 

 

 

Websites and articles:

Be sure to login from NMSU internet to read the articles

o         http://www.invitrogen.com/site/us/en/home/References/Molecular-Probes-The-Handbook/Introduction-to-Fluorescence-Techniques.html

o         http://micro.magnet.fsu.edu/primer/techniques/fluorescence/fluorointrohome.html

o         http://www.evidenttech.com/quantum-dots-explained.html

o         http://probes.invitrogen.com/media/publications/600.pdf

o         http://physicsworld.com/cws/article/print/17016

o         Quantum Dots for Live Cells, in Vivo Imaging, and Diagnostics  (Michalet et al) [online (NMSUBB)]

Bio 350 Submit draft personal and research statements suitable for internship applications (50 points)

 

1) Principles of Fluorescence.

  • Access the following link and be prepared to explain the following figures:  Fig 1, 2, 4, 1.96, 1.54, 10.56, 2.28

o         http://www.invitrogen.com/site/us/en/home/References/Molecular-Probes-The-Handbook/Introduction-to-Fluorescence-Techniques.html

  • Access the following link and complete the tutorials for Jablonski diagram, solvent effects and photobleaching

http://micro.magnet.fsu.edu/primer/techniques/fluorescence/fluorointrohome.html

2) Quantum dots come to class ready to answer the following:

  • What are QDs made of?
  • How do QDs work?
  • What are their optical properties?
  • What are applications for QDs in biology?
  • What are the concerns about QDS and biological systems (cells, organisms)

 

Feb 16

Bioenergetics &

Photosynthesis

 

Molecular Motors

 

Academic Honesty (Burk)

Read

o         Soft NanoMachine Text

o         Ch 6 Machines and Mechanisms (pp 146-153)

o         Ch 8 Single Molecule Electronics (pp 186-195)

o         View the Photosynthesis Animation

o         http://www.cnr.vt.edu/dendro/forestbiology/photosynthesis.swf 

o         Quantum Dots for Live Cells, in Vivo Imaging, and Diagnostics  (Michalet et al) [online (NMSUBB)]

1) Be prepared to discuss the QD literature from Feb 9 and to

answer to these questions:

o         Provide examples of linear and rotary motors in nature

o         How are conventional solar cells and photosynthesis similar and different?

o         Who is Michael Graetzel and what did he invent?

2) Bring pictures of the hypothetical three-dimensional structures of two biomolecular motors of your choice  as determined by Xray and other diffraction methods. This website  may be useful: http://www.ncbi.nlm.nih.gov/Structure/index.shtml

3) Bring a picture of your favorite Nanobot to class

Feb 23

Nanomaterials and BioToxicity

 

GUEST SPEAKER: Dr. Kevin Houston, Chemistry & Biochemistry, NMSU

Read the article by Dr. Houston posted on Blackboard

Bio 350 Submit revised  personal and research statements suitable for internship applications (50 points)

Bring 3 questions to ask Dr. Huston based on your reading of his article.  You will hand submit these questions to the GA at the beginning of class.

 

Mar 2

Measuring the Invisible

 

Ethical and Societal Dimensions of Nanoscience Research

 

Reading the Primary Literature

Read

o         How to Read a Scientific Paper

o         Nanotechnology and the Developing World (Salamanca-Buentello et al) [online (NMSUBB)]

o         Single molecule nanobioscience (Akihiko Ishijima and Toshio Yanagida) [online (NMSUBB)]

o         Quantum dots are powerful multipurpose vital labeling agents in Zebrafish embryos (Rieger et al) [online (NMSUBB)]

o         View movies online under supplemental materials

Submit Journal Part 1 in class (300 points)

 

Print this picture and bring to class:

o        http://nobelprize.org/educational_games/physics/microscopes/powerline/index.html

For each paper:

o         Be prepared to discuss the papers and explain the figures. 

o         Bring a list to class of  up to 10 key concepts presented in the paper

o         If the papers raise ethical issues or concerns please summarize them briefly for class discussion

Mar 9

 

Reading the Primary Literature

 

Design Challenge

Last day to drop with W

Read

o         Nanotechnology and the Developing World: Will Nanotechnology Overcome Poverty or Widen Disparities? (Invernizzi and Foladori) [online (NMSUBB)]

o         Applications of Nanobiotechnology in Clinical Diagnostics (Jain) [online (NMSUBB)]

o         Nanoparticles: pharmacological and toxicological significance (Medina et al) [online (NMSUBB)]

Be prepared to discuss the papers and explain the figures.

For each paper:

o         Be prepared to discuss the papers and explain the figures. 

o         Bring a list to class of  up to 10 key concepts presented in the paper

o         If the papers raise ethical issues or concerns please summarize them briefly for class discussion

Mar 16

Lab Demos

View the tutorials before the class:

Scanning Electron Microscopy  (SEM) http://micro.magnet.fsu.edu/primer/java/electronmicroscopy/magnify1/index.html

Transmission Electron Microscopy (TEM)

http://nobelprize.org/educational_games/physics/microscopes/tem/index.html

http://nobelprize.org/educational_games/physics/microscopes/tem/preparation.html

http://nobelprize.org/educational_games/physics/microscopes/tem/gallery/index.html

Atomic Force Microscopy (AFM)

http://www.jpk.com/what-is-atomic-force-microscopy.432.html

GRADS READ:

Crystallisation, structure and function of plant light-harvesting Complex II (Barros, Kühlbrandt) [online (NMSUBB)]

Bio 550 Submit draft 2 page research proposal (50 points)

 

Bring a sample to scan of woody plant or mineral origin.

Mar 23

Spring Break

Vacation!

n/a

Apr 20

Student Dissemination Presentations

 

Not applicable

Bio 550 Submit revised 2 page research proposal (50 points)

 

Submit Journal Part 2 in class (300 points)

 

Present dissemination project (150 points)

May 6

 

Finals Week

Date/time in official schedule for courses that meet Tuesday at 3:30

Final Exam (150 points)

 

Thursday May 6

3:30-5:30 pm

Final Exam (150 points)

 

Thursday May 6

3:30-5:30 pm