The Hoatzin Genome Project

Statistics Describing Hoatzin Sequencing-Reads Mapped to the Chicken Reference Genome 454 results

Hoatzin Mapped to Chicken Genome Browser 454 results (name = guest, password = guest)

Mitochondrial Genome 454 results (password required)

Genome Browser Instructions: Select chromosome by link, highlight section of reference genome in "Overview" or "Details"(too large of a selection will slow the response) or type in locus, "Expand and Label" if desired using "Configure Tracks" link

Genome Sequencing Progress (updated August 2011):

total 454 bases sequenced >1.658 Gigabases (>1X coverage, 6X in progress)

total Illumina coverage 100X

total 454 shotgun bases assembled >700 Megabases (42% of total sequenced)

total 454 contigs assembled >234.5 Megabases (17.6% of average avian genome)

total Illumina contigs assembled 1.14 Gigabases (82.6% of average avian genome)

 

454 contigs N50 = 687 bp, largest >20kb

Illumina contigs N50 = 24kb, scaffold N50 = 2.9 Megabases

 

Collaborators

Funding

 

 

 

 

 

 

 

 

 

 

 

 

 

Genome Sequencing Facility

Genome Sequencing Faculty, Staff, and Students

Houde Home Page

JGI Hoatzin Crop Microbiome Project

photo credit: Hernan Povedano

This project is supported in part by the National Science Foundation award # DBI_0821806 to P. Houde